Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.qc.parse_fsreconall_stats(fs_dirs)[source]¶

Parse the FreeSurfer reconall generated quality control files for all subjects.

Parameters: fs_dirs : list of str

list of FreeSurfer recon-all generated directories.
Returns: df_scores : pandas DataFrame

the FreeSurfer recon-all scores organized by ‘participant_id’, ‘session’, ‘run’, ‘euler’.